PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02119.10
Common NameJCGZ_14246, LOC105642835
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 195aa    MW: 21608 Da    PI: 4.9254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02119.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-184494155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Jcr4S02119.10 44 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 94
                   68*****887.**********843...6************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-124494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3045103IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2045103IPR016177DNA-binding domain
SMARTSM003801.6E-3545108IPR001471AP2/ERF domain
PROSITE profilePS5103223.03745102IPR001471AP2/ERF domain
PRINTSPR003672.7E-124657IPR001471AP2/ERF domain
CDDcd000182.71E-2946103No hitNo description
PRINTSPR003672.7E-1284104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEQPPFTEDD PATTTTTTTT ATSPQDRINR NSDASRCSGG TRHPVYRGVR KRRWGKWVSE  60
IREPRKKSRI WLGSFPVPEM AAKAYDVAAY CLKGCKAQLN FPEELEDLPR PSSCTARDIQ  120
AAAAKAANSM KKSNIANSDG DGDSNGDREN DDFWGEIELP ELMNSGLNWS SCAWSFAGDC  180
TWMDGEAPQQ FMACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1546102663ATERF1
3gcc_A3e-1546102663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083196.11e-145PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI29e-68ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A067K8641e-145A0A067K864_JATCU; Uncharacterized protein
STRINGPOPTR_0014s09540.12e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-59ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]